1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acacacacacacacacacacacacacacatgtatacgcacacacgcctacacctcttgacaccccttcacaaacctccaccccaccctcccctccgccagCCGCTGGAGTACGACTACGACCAGTTCGAGCGGCTGCTGCTGGGAGCGGCCTGGACCACCTACAACAACAGGCGCAAGGCGGCGCCGGGGCCCGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO99074 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
cctacacctcttgacaccccttcacaaacctccaccccaccctcccctccgccagCCGCTGGAGTACGACTACGACCAGTTCGAGCGGCTGCTGCTGGGAGCGGCCTGGACCACCTACAACAACAGGCGCAAGGCGGCGCCGGGGCCCGCAG
tcttgac putative branch site (score: 3)
cctccaccccaccctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacacacacacacacacacacacacacatgtatacgcacacacgcctacacctcttgacaccccttcacaaacctccaccccaccctcccctccgccagCCGCTGGAGTACGACTACGACCAGTTCGAGCGGCTGCTGCTGGGAGCGGCCTGGACCACCTACAACAACAGGCGCAAGGCGGCGCCGGGGCCCGCAG
acacaca
- - - - - - - - - - - - - - -tgtatac
- - - - - - - - - - - - - - - - - - - acacacg
- - - - - - - - - - - - - - - - - - - - - - - - acacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacaaa