1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGGTGCTATGCCGTGCGGACGCGGGTGCGGCACAGCCCATGACGCTGGTGAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATGgtgagccgggggcctgcggggagatgcgtcgggctggggtgttggggctcatgtggtgtgcaccagcggcgggcaggtggggagtgtgctggagcggtgc...
species | Chlamydomonas reinhardtii |
transcript | EDO99062 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATG ACAAGGACCGGAACGGCACCCTGTCTCTCAAGEST: gi|15695007|gb|BI719328.1|BI719328
genomic: GAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATGgtgagccggg ... cttttgacagACAAGGACCGGAACGGCACCCTGTCTCTCAAG
EST: GAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATG ACAAGGACCGGAACGGCACCCTGTCTCTCAAGEST: gi|16437467|gb|BM002687.1|BM002687
genomic: GAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATGgtgagccggg ... cttttgacagACAAGGACCGGAACGGCACCCTGTCTCTCAAG
EST: GAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATG ACAAGGACCGGAACGGCACCCTGTCTCTCAAG
genomic: GAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATGgtgagccggg ... cttttgacagACAAGGACCGGAACGGCACCCTGTCTCTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGTGCTATGCCGTGCGGACGCGGGTGCGGCACAGCCCATGACGCTGGTGAACCTCATTTCCGCCCTGGCGAAGGCAAGCAGCGCATGGGAGAAGTATGgtgagccgggggcctgcggggagatgcgtcgggctggggtgttggggctcatgtggtgtgcaccagcggcgggcaggtggggagtgtgctggagcggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtgtg