1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCTGGTCGGAAGCCCCCAACACGGGCGATGGCGGGACGGCTCAGCAGTCCCAATACTGCCACATCTCCTACGCCGCAACAGCCGTGTCCACCCTTGAAGgtatgctgcggagttgtgccggctttggcctgattactcgagcctgacgccaggcagcaccggggccaacgcacgccacctggcagccagcctgccttct...
species | Chlamydomonas reinhardtii |
transcript | EDO99036 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAATACTGCCACATCTCCTACGCCGCAACAGACGTGTCCACCCTTGAAG GCCGACCAAC-ATCGCCTACGACACAAC-TACCTAGTGCACAAGGAGCTG-
genomic: CCAATACTGCCACATCTCCTACGCCGCAACAGCCGTGTCCACCCTTGAAGgtatgctgcg ... caacacgcagGCCGACCCACCATCGCCTACGACACCACCTACCTAGTGCACAAGGAGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGGTCGGAAGCCCCCAACACGGGCGATGGCGGGACGGCTCAGCAGTCCCAATACTGCCACATCTCCTACGCCGCAACAGCCGTGTCCACCCTTGAAGgtatgctgcggagttgtgccggctttggcctgattactcgagcctgacgccaggcagcaccggggccaacgcacgccacctggcagccagcctgccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgcac