1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcacgcaatcttcgccaatgccttttcaatctgcctgcctgcctgctttctactggcctcgtcactgccgcggcctgttcccctctcctgctccgcacagCCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGCCGCTGCAGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO99015 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACCTGATTTACAACACAAACATGCTGTCGGGCAGCGGCTTCGGTCCAG CCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGCEST: gi|15696843|gb|BI721148.1|BI721148
genomic: GACCTGATTTACAACACAAACATGCTGTCGGGCAGCGGCTTCGGTCCAGgtgaggtggg ... ctccgcacagCCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGC
EST: GACCTGATTTACAACACAAACATGCTGTCGGGCAGCGGCTTCGGTCCAG CCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGCEST: gi|15367724|gb|BI527150.1|BI527150
genomic: GACCTGATTTACAACACAAACATGCTGTCGGGCAGCGGCTTCGGTCCAGgtgaggtggg ... ctccgcacagCCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGC
EST: GACCTGATTTACAACACAAACATGCTGTCGGGCAGCGGCTTCGGTCCAG CCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGC
genomic: GACCTGATTTACAACACAAACATGCTGTCGGGCAGCGGCTTCGGTCCAGgtgaggtggg ... ctccgcacagCCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGC
ctttctactggcctcgtcactgccgcggcctgttcccctctcctgctccgcacagCCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGCCGCTGCAGCAG
cctgttcccctctcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacgcaatcttcgccaatgccttttcaatctgcctgcctgcctgctttctactggcctcgtcactgccgcggcctgttcccctctcctgctccgcacagCCGACACGTTGGCGGGCCTGCTGTGGGGCGTGAGCCTCTTCTACGCCTCGCCGCTGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
tcacgca