Sequence
atgc intronic sequence ATGC exonic sequence...ccacgccggaatgctcaatccctcaacccctcgacccctcagtccctcaacccctcaacccctctacacccacacgcgaacacacaccctgcctgcacagGTGGAGACGCTCATTGAGCTGCGCGGCATGCGGCTGGAGGCGGCCGGCAAGATGAGCCGCTACTCGCCGCTGCTGGCAGTGGAGCTGGCCAA
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO98582 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10785685|gb|AV642357.1|AV642357EST: TGCCCACTTCGCGGCCGACGCCCTATCTGCTGCTGGACGCCTTGGAGTAT GTGGAGACGCTCATTGAGCTGCGCGGCATGCGGCTGGAGGCGGACGGCAAG
genomic: TGCCCACTTCGCGGCCGACGCCCTATCTGCTGCTGGACGCCTTGGAGTATgtaagttgcg ... gcctgcacagGTGGAGACGCTCATTGAGCTGCGCGGCATGCGGCTGGAGGCGGCCGGCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcaacccctcaacccctctacacccacacgcgaacacacaccctgcctgcacagGTGGAGACGCTCATTGAGCTGCGCGGCATGCGGCTGGAGGCGGCCGGCAAGATGAGCCGCTACTCGCCGCTGCTGGCAGTGGAGCTGGCCAA
ccctgcct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccacgccggaatgctcaatccctcaacccctcgacccctcagtccctcaacccctcaacccctctacacccacacgcgaacacacaccctgcctgcacagGTGGAGACGCTCATTGAGCTGCGCGGCATGCGGCTGGAGGCGGCCGGCAAGATGAGCCGCTACTCGCCGCTGCTGGCAGTGGAGCTGGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - atgctca
- - - - - - - - - tccctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca