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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgttgttaacggctttgtcctgcacccgaccaccctcacacgcatcccgcctacctggaacacacgccacgctacgctacggcccccgcatcaccatccccgcccattccccgcacttgacagcctccctccgcaccccacccctcgtctttgcatcccctgcagCCACGGGCGACGGCTGCCGCTTCTACCAGCACACCGCGCCGGTCCTGCCGTCGTCGCGGGGCCCGCAAGCCGCTCCGGCGCAGGACTGGGCTCCGCAACA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98558
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10781209|gb|AV637889.1|AV637889
EST:     GCCATGAATACATCGACACGCAGGCTCCCGCAATC                         CCACGGGCGACGGCTGCCGCTTCTACCAGCACACCGCGCCGGTCCTGCCGT
genomic: GCCATGAATACATCGACACGCAGGCTCCCGCAATCgtgagcgttg ... tcccctgcagCCACGGGCGACGGCTGCCGCTTCTACCAGCACACCGCGCCGGTCCTGCCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcacttgacagcctccctccgcaccccacccctcgtctttgcatcccctgcagCCACGGGCGACGGCTGCCGCTTCTACCAGCACACCGCGCCGGTCCTGCCGTCGTCGCGGGGCCCGCAAGCCGCTCCGGCGCAGGACTGGGCTCCGCAACA
    acttgac  putative branch site (score: 4)
                              cccctcgtctttgcat  putative PPT