Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15703663|gb|BI727968.1|BI727968EST: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|15704065|gb|BI728370.1|BI728370EST: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|16436616|gb|BM001836.1|BM001836EST: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|15701283|gb|BI725588.1|BI725588EST: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|9441426|gb|BE441916.1|BE441916EST: GCTCTGTCTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|9440947|gb|BE441444.1|BE441444EST: GCTCTGTCTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|15700564|gb|BI724869.1|BI724869EST: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|15373149|gb|BI532575.1|BI532575EST: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
EST:
gi|15372303|gb|BI531729.1|BI531729EST: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCT CAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
genomic: GCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgtt ... ttgcgcgccgCAGGAATGGGAGGCTCCCATGCCCAGCAAGCGGCCAGACATCTTCCCGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGACCCCTGGCGCTGCCGGTCGCTCGGCGGCGACCTGCATTCGTGGTTTGCTCTGTGTCGCCCGACACGGAGGAGCAGCGATCGCCACTGGACGCGCCTcaggtatgttggctgcccaatgtgcgcgcagagcgttcagcagcgccaggttcgctccgtggcgtggagtgctgaaatggcgatggtcacaacggtctcacggtccttgtgctgcaacgttggttgcgcgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG