1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcgctaggtgcctcgcctgcacacactttggctgccgaaccagaggccgggcaccggtaccaaacgagaccctgatttcacaaccctcttggccccagagCTTGACCTCGACGTCAAGGACACCTACCTCAAACTCAGCTCACCGCAATA
species | Chlamydomonas reinhardtii |
transcript | EDO98439 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gccgggcaccggtaccaaacgagaccctgatttcacaaccctcttggccccagagCTTGACCTCGACGTCAAGGACACCTACCTCAAACTCAGCTCACCGCAATA
ccctgat putative branch site (score: 4)
ccctcttg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgctaggtgcctcgcctgcacacactttggctgccgaaccagaggccgggcaccggtaccaaacgagaccctgatttcacaaccctcttggccccagagCTTGACCTCGACGTCAAGGACACCTACCTCAAACTCAGCTCACCGCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - gcacaca
- - - - - - - - - - - - - - - - - - -aaccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcaca