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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACGATGCGCTTCAGCGTGGCGCTCTTGGTTGCCTTGGCCTTGGCCCACGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGCgtaagtaggagttgtttttggccgagggcggcatgtgacaccgcatgcgacgaccaagtgccaccttccactgaccttggctaccgacccgtattcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98438
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10788411|gb|AV626131.1|AV626131
EST:     CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGC                         CTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGCCCAGCAGCTAGGTT
genomic: CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGCgtaagtagga ... gtattcgcagCTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGCCCAGCAGCTAGGTT
EST: gi|6549997|gb|AV395781.1|AV395781
EST:     CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGC                         CTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGCCCAGCAGCTAGGTT
genomic: CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGCgtaagtagga ... gtattcgcagCTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGCCCAGCAGCTAGGTT
EST: gi|7593126|gb|AW707489.1|AW707489
EST:     CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGC                         CTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGCCCAGCAGCTAGGTT
genomic: CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGCgtaagtagga ... gtattcgcagCTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGCCCAGCAGCTAGGTT
EST: gi|10782926|gb|AV639598.1|AV639598
EST:     CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGC                         CTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGC
genomic: CGCTTGGACTAGTGCAGCCCAGGGTTTGCGGCGCCCGGATGCGGACTTGCgtaagtagga ... gtattcgcagCTGCGACATCTGAGTTGGACAATGGCGGCACCAGCGC