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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAAGGAAATTATGGAGAAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactgcgtaaaggatgtgggcgcgggacaggccgggggtaggcgtgcccacgacacgcacgccaggcacacacgcaccctacttgacgacccaac...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98408
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49459433|gb|BP087346.1|BP087346
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTC
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTC
EST: gi|23362105|gb|BU649925.1|BU649925
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|15370556|gb|BI529982.1|BI529982
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|15370685|gb|BI530111.1|BI530111
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|15368559|gb|BI527985.1|BI527985
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGAGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGNNCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|6540785|gb|AV386569.1|AV386569
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|14239901|gb|BG858717.1|BG858717
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|15370835|gb|BI530261.1|BI530261
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|23362104|gb|BU649924.1|BU649924
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|15368558|gb|BI527984.1|BI527984
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|15371459|gb|BI530885.1|BI530885
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
EST: gi|15370652|gb|BI530078.1|BI530078
EST:     AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGG                         ACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT
genomic: AAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactg ... caccttgcagACTGCGCTTTTCGCGCTGCCGCGACAAGCAGACTGCGTTCGAGAAGGCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAAGGAAATTATGGAGAAGTCCCCGGAGGAATTCAAGGAGTATGCGCAGTGCCTAGACTGGTATGGgtaagtactgcgtaaaggatgtgggcgcgggacaggccgggggtaggcgtgcccacgacacgcacgccaggcacacacgcaccctacttgacgacccaac

- - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaca