1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccctctgggcattccctactgacacctcctcggttgtcttcaactgcattctcatgcttgccggcttgctcctcctcctgcgcgctcctcccaccaacagAGTCCACTGCCTACAGCGAGCTGCTGCCGCAGTGGACTGCCGCGGGCGTCAAGGTGGTGTCGGTGTACAGCGAGAGCAAGCAGGGCTACGTGCACGACGT
species | Chlamydomonas reinhardtii |
transcript | EDO98199 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGCGCTGGCCGGCCGCGACGTGACGCTGTACTACGGCACCCGCAACCCGG AGTCCACTGCCTACAGCGAGCTGCTGCCGCAGTGGACTTCCGCGGGCGTCAEST: gi|22056314|gb|BQ812276.1|BQ812276
genomic: CGCGCTGGCCGGCCGCGACGTGACGCTGTACTACGGCACCCGCAACCCGGgtgagggcac ... ccaccaacagAGTCCACTGCCTACAGCGAGCTGCTGCCGCAGTGGACTGCCGCGGGCGTCA
EST: CGCGCTGGCCGGCCGCGACGTGACGCTGTACTACGGCACCCGCAACCCGG AGTCCACTGCCTACAGCGAGCTGCTGCCGCAGTGGACTGCCGCGGGCGTCA
genomic: CGCGCTGGCCGGCCGCGACGTGACGCTGTACTACGGCACCCGCAACCCGGgtgagggcac ... ccaccaacagAGTCCACTGCCTACAGCGAGCTGCTGCCGCAGTGGACTGCCGCGGGCGTCA
gcattctcatgcttgccggcttgctcctcctcctgcgcgctcctcccaccaacagAGTCCACTGCCTACAGCGAGCTGCTGCCGCAGTGGACTGCCGCGGGCGTCAAGGTGGTGTCGGTGTACAGCGAGAGCAAGCAGGGCTACGTGCACGACGT
cttgctcctcctcctg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctctgggcattccctactgacacctcctcggttgtcttcaactgcattctcatgcttgccggcttgctcctcctcctgcgcgctcctcccaccaacagAGTCCACTGCCTACAGCGAGCTGCTGCCGCAGTGGACTGCCGCGGGCGTCAAGGTGGTGTCGGTGTACAGCGAGAGCAAGCAGGGCTACGTGCACGACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - -actgaca
- - - - - - - - - - - - - - - - -ttgtctt
- - - - - - - - - - - - - - - - - - - - - - - -attctca