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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtgcggggtgctggagtgcgtgctggcctgctagtggactgcgggactgcacacttgcctgcggcgtgattgctgcgtggtgctcctcgtgtgcaacgttccgccctctacccagtcctagctagctgatcccatcccgccatgcagGCACGCCCTCCCTGTGGCCCGGTCGCCGGCTCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97914
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6547842|gb|AV393626.1|AV393626
EST:     CAGCAGATGTGTTCTGTCGCAGACATGCCGGACGCTGCTGCAGCTGTGCG                         GCACGCCCTCCCTGTGGCCCGGTCGCCGGCTCG
genomic: CAGCAGATGTGTTCTGTCGCAGACATGCCGGACGCTGCTGCAGCTGTGCGgtgaggtgcg ... cgccatgcagGCACGCCCTCCCTGTGGCCCGGTCGCCGGCTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaacgttccgccctctacccagtcctagctagctgatcccatcccgccatgcagGCACGCCCTCCCTGTGGCCCGGTCGCCGGCTCG
                               agctgat  putative branch site (score: 4)
                                     tcccatccc  CT-rich tract