1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacatgctactgtgggtggtgcagctgttgggcatgtcacaaaaccgtgaacgacccctgtgtgaacaagctgtggcgttgttccttgcgctaatgccagATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCGGTGACGGCGGGCGGCCCGGCCTGGGCCGAGTACTTCAAG
species | Chlamydomonas reinhardtii |
transcript | EDO97874 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTGCGGGGCGCGGAGACGCCG ATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCGEST: gi|16072898|gb|BI874894.1|BI874894
genomic: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTGCGGGGCGCGGAGACGCCGgtgagaggac ... ctaatgccagATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCG
EST: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTTCGGGGCGCGGAAACCCCG ATCATGCCGGCGCTTTTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCGEST: gi|161793639|gb|FC080150.1|FC080150
genomic: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTGCGGGGCGCGGAGACGCCGgtgagaggac ... ctaatgccagATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCG
EST: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTGCGGGGCGCGGAGACGCCG ATCATGCCGGCGCTACTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCGEST: gi|15704576|gb|BI728897.1|BI728897
genomic: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTGCGGGGCGCGGAGACGCCGgtgagaggac ... ctaatgccagATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCG
EST: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTGCGGGGCGCGGAGACGCCG ATCATGCCGGCGCTTCTGCTGGCGGGCGGNGTGTACTACATCGGCATGGCG
genomic: CGGAGCTGACCGGCTGGAACCGGCTGTTCCTGCGGGGCGCGGAGACGCCGgtgagaggac ... ctaatgccagATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCG
cgtgaacgacccctgtgtgaacaagctgtggcgttgttccttgcgctaatgccagATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCGGTGACGGCGGGCGGCCCGGCCTGGGCCGAGTACTTCAAG
cgctaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatgctactgtgggtggtgcagctgttgggcatgtcacaaaaccgtgaacgacccctgtgtgaacaagctgtggcgttgttccttgcgctaatgccagATCATGCCGGCGCTTCTGCTGGCGGGCGGGGTGTACTACATCGGCATGGCGGTGACGGCGGGCGGCCCGGCCTGGGCCGAGTACTTCAAG
-acatgct
- - - - - tgtgggt
- - - - - - - - - - - - - - - - - - tcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagct