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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcgacgggacaagcattctgtgcgcgcgccactgattgtgctgtcggcagccgctcactcggattgctatttgttacttcgcacagGCGGGCGGCTCGTGAAGCGCGGTCTGCGTCTTCGCATCGGTGTGGACTACGGCCGGGCCATGGTGCGTCTGGTGCCCCGCAGCGGCCGACTGGACTACGT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97279
intron # 10
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgattgtgctgtcggcagccgctcactcggattgctatttgttacttcgcacagGCGGGCGGCTCGTGAAGCGCGGTCTGCGTCTTCGCATCGGTGTGGACTACGGCCGGGCCATGGTGCGTCTGGTGCCCCGCAGCGGCCGACTGGACTACGT
                    cgctcac  putative branch site (score: 3)
                                          ttacttc  putative PPT
                                    tatttgtta  TA-rich tract