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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacaacgggtgcagtgtgcccaattcggtatatgccggccgctctgtcactttgtaccttcatgtatgccccccccccctttgcccaccccaaaccgcagGCGTTCCGCAACCACGACGGCCTGGCCTCTCAGCTATCTCGCTCGCTGGCGGCCGGAGTCATCCTGGCGCTGGCGCTGGTGCACATCATACCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97270
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792980|gb|AV630346.1|AV630346
EST:     TCATTTTAATAGCGGGACTATGCGGCGCGCTGCCGCCGCTGTTCATGAAG                         GCGTTCCGCAACCACGACGGTCTGGCCTCTCAGCTATCTCGCTCGCTGGCG
genomic: TCATTTTAATAGCGGGACTATGCGGCGCGCTGCCGCCGCTGTTCATGAAGgtatacaacg ... caaaccgcagGCGTTCCGCAACCACGACGGCCTGGCCTCTCAGCTATCTCGCTCGCTGGCG
EST: gi|10793543|gb|AV630909.1|AV630909
EST:     TCATTTTAATAGCGGGACTATGCGGCGCGCTGCCGCCGCTGTTCATGAAG                         GCGTTCCGCAACCACGACGGCCTGGCCTCTCAGCTATCTCGCTCGCTGGCG
genomic: TCATTTTAATAGCGGGACTATGCGGCGCGCTGCCGCCGCTGTTCATGAAGgtatacaacg ... caaaccgcagGCGTTCCGCAACCACGACGGCCTGGCCTCTCAGCTATCTCGCTCGCTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcactttgtaccttcatgtatgccccccccccctttgcccaccccaaaccgcagGCGTTCCGCAACCACGACGGCCTGGCCTCTCAGCTATCTCGCTCGCTGGCGGCCGGAGTCATCCTGGCGCTGGCGCTGGTGCACATCATACCAG
                   tatgccccccccccct  CT-rich tract