Sequence
atgc intronic sequence ATGC exonic sequenceGTGCTGGAGGTGGACGTGGGTGGTGGCGTGGGCTTTGAGGTGGACCAGGGTGTGGGCGCACTGCGACTGTGCGCGGGCGAGACAAAGAACAGCCCTGAAGgtgcgtgcgtgtctgcccaagcgagtgctcgatggcatgggtgcacatgtgataggtaggaaggacaaaggattcggccagcacacagcgtgtgtgtgtt...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDO97245 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14228849|gb|BG847665.1|BG847665EST: TGTGGGCGCACTGCGACTGTGCGCGGGCGAGACAAAGAACAGCCCTGAAG AGATGGATGATGCCGACGAGCAGCTGCAGACGTTGTTCCTGGTGGTGGCCT
genomic: TGTGGGCGCACTGCGACTGTGCGCGGGCGAGACAAAGAACAGCCCTGAAGgtgcgtgcgt ... gcggtcgcagAGATGGATGATGCCGACGAGCAGCTGCAGACGTTGTTCCTGGTGGTGGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCTGGAGGTGGACGTGGGTGGTGGCGTGGGCTTTGAGGTGGACCAGGGTGTGGGCGCACTGCGACTGTGCGCGGGCGAGACAAAGAACAGCCCTGAAGgtgcgtgcgtgtctgcccaagcgagtgctcgatggcatgggtgcacatgtgataggtaggaaggacaaaggattcggccagcacacagcgtgtgtgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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