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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctggcttgcccagaccgcgcgtaatgaaggctcgcgacatggtcaacctctgtcataacgctgcgcggctcttaagaaaggcgtcgctatgattctacatgcctgtgtgacgctagctatgcctacgattactgtgagacgttcgacccccgcatgcagGCACCCCATTTGCACCAACCTCTTCATCATTTTCGCTTCTCTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97200
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10774071|gb|AV624894.1|AV624894
EST:     CACCAGGTGCTGGTCGTATCAAAGCTGCCGCTGGATGGCCTCTACACTTG                         GCACCCCATTTGCACCAACCTCTTCATCATTTTCGCTTCTCTGG
genomic: CACCAGGTGCTGGTCGTATCAAAGCTGCCGCTGGATGGCCTCTACACTTGgtaagcctgg ... ccgcatgcagGCACCCCATTTGCACCAACCTCTTCATCATTTTCGCTTCTCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgacgctagctatgcctacgattactgtgagacgttcgacccccgcatgcagGCACCCCATTTGCACCAACCTCTTCATCATTTTCGCTTCTCTGG
                                          cccccgc  CT-rich tract