1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccgggggcggacgcataggctggcaacagcaggcagaaaattcccgttcacgctcacgctcacgtgcacgtgcctgtgctgtaccttttcatttgctcagGGAGCGGCGGCAGCAGTGACCCCAACTATTACGAGCTGCTAGGACTGGAGCCGGACTGCGATGAGGAGGACATCAAG
species | Chlamydomonas reinhardtii |
transcript | EDO97086 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gttcacgctcacgctcacgtgcacgtgcctgtgctgtaccttttcatttgctcagGGAGCGGCGGCAGCAGTGACCCCAACTATTACGAGCTGCTAGGACTGGAGCCGGACTGCGATGAGGAGGACATCAAG
cgctcac putative branch site (score: 3)
ccttttcatttgctc putative PPT
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgggggcggacgcataggctggcaacagcaggcagaaaattcccgttcacgctcacgctcacgtgcacgtgcctgtgctgtaccttttcatttgctcagGGAGCGGCGGCAGCAGTGACCCCAACTATTACGAGCTGCTAGGACTGGAGCCGGACTGCGATGAGGAGGACATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - acgcata
- - - - - - - - - - -ggcaaca
- - - - - - - - - - - - - - - aggcaga
- - - - - - - - - - - - - - - - - - - - - - - - -acgctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctgt