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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggcgcagtgcatgcatgagatacgaaatgtcacacgaggcgaagcatgggcgtgatcgagcgcaaaatgcggaccggcttgcgcgagtcgccacgcgcatgcagctgatgttctacaaacatgccttatccacttgcagACTGCGGTGTAGTTGCTTCATGGGGTCGAGGTGAAGATGGCCAGCTTGGGCATGGCCAGGCAGACCAGTGCACTTCCCCAACATGCATCGCCGCATTAAC

Basic information

species Chlamydomonas reinhardtii
transcript EDO97078
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO97078 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S25_199V6.2 (Physcomitrella patens), 3'ss of exon 2
gtgagtggcgcagtgcatgcatgagatacgaaatgtcacacgaggcgaagcatgggcgtgatcgagcgcaaaatgcggaccggcttgcgcgagtcgccacgcgcatgcagctgatgttctacaaacatgccttatccacttgcagACTGCGGTGTAGTTGCTTCATGGGGTCGAGGTGAAGATGGCCAGCTTGGGCATGGCCAGGCAGACCAGTG-CACTTCCCCAACATGCATCGCCGCATTAAC
                                |||| |  |   | ||         ||     || || |  |   |||  ||||  ||  | ||    |    | ||  ||   || | |    |||   |        ||||   |||   | |||  |||||||||||| ||||||||||| ||||| ||||||||  | || ||  |  | ||| | |||    | |||    ||| |   
--------------------------------atgtgatgctgtgggagatt---atgtttctaagtgcgag-taatgacatgcttcagcatg-cgttctgtttgttcaagtggaatttttcttgaatgttgt--------gcagCTGGCGACTTGGTTTGTTCATGGGGTCGGGGTGAAGATGGGCAGCTCGGGCATGGAGATGCTGAAGAAAGGCACCTGCCCCTTGT-CATTAGTGCACTTGA

upper sequence: EDO97078 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: PP1S245_57V6.1 (Physcomitrella patens), 3'ss of exon 1
gtgagtggcgcagtgcatgcatgagatacgaaatgtcacacgaggcgaagcatgggcgtgatcgagcgcaaaatgcggaccggcttgcgcgagtcgccacgcgcatgcagctgatgttctacaaacatgccttatccacttgcagACTGCGGTGTAGTTGCTTCATGGGGTCGAGGTGAAGATGGCCAGCTTGGGCATGGCCAGGCAGACCAGTGCACTTCCCCAACATGCATCGCCGCATTAAC
                                 | | ||          || |||  || ||  | |  |  ||    | | ||  || |  |            || ||| |          |   ||  || | ||  ||  ||||  ||| |      |||||||||||| ||||||||||| || ||||| |||||| | || ||  |  |    | ||| |||    |   |||  |   
---------------------------------ttttacttagctgatggcttggtggtaat--aacttagtattgttatccgca-gcactggcttttgtctcattgaagcggggag---gggattgtgttttgtgcagCTGGTGACT-TGGTATG-----TTCATGGGGTCGTGGTGAAGATGGGCAACTTGGACATGGCGATGCCGAAGAACGTCACTTCCCCACAATTGTTAGCGCCCTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtcgccacgcgcatgcagctgatgttctacaaacatgccttatccacttgcagACTGCGGTGTAGTTGCTTCATGGGGTCGAGGTGAAGATGGCCAGCTTGGGCATGGCCAGGCAGACCAGTGCACTTCCCCAACATGCATCGCCGCATTAAC
                  agctgat  putative branch site (score: 4)
                                       ccttatcc  putative PPT