1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagcgagagcaaaagacatgtgtggggaccggcgctgcgctggccgggcgctgctattaacataacaagcgggagcacgaagtgctgcaaagcccgtgttgtctcgctggcgcggagccatcgatttcgcgccaatattgctcgccaacccactacagAGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGCTGGCCAGCCTGCCCGGCACCAGCGAGGAGGACCGGAAGGCGGCGCTGCA
species | Chlamydomonas reinhardtii |
transcript | EDO97072 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCCACCTTCGGCGTCAAGGGCGTCAAGGAGCACTGCTTTTTCATGAAGG AGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGCEST: gi|15695388|gb|BI719693.1|BI719693
genomic: CGCCACCTTCGGCGTCAAGGGCGTCAAGGAGCACTGCTTTTTCATGAAGGgtgagcgaga ... cccactacagAGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGC
EST: CGCCACCTTCGGCGTCAAGGGCGTCAAGGAGCACTGCTTTTTCATGAAGG AGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGCEST: gi|239840614|gb|GR282950.1|GR282950
genomic: CGCCACCTTCGGCGTCAAGGGCGTCAAGGAGCACTGCTTTTTCATGAAGGgtgagcgaga ... cccactacagAGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGC
EST: CGCCACCTTCGGCGTCAAGGGCGTCAAGGAGCACTGCTTTTTCATGAAGG AGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGC
genomic: CGCCACCTTCGGCGTCAAGGGCGTCAAGGAGCACTGCTTTTTCATGAAGGgtgagcgaga ... cccactacagAGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGC
tcgctggcgcggagccatcgatttcgcgccaatattgctcgccaacccactacagAGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGCTGGCCAGCCTGCCCGGCACCAGCGAGGAGGACCGGAAGGCGGCGCTGCA
aatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgagagcaaaagacatgtgtggggaccggcgctgcgctggccgggcgctgctattaacataacaagcgggagcacgaagtgctgcaaagcccgtgttgtctcgctggcgcggagccatcgatttcgcgccaatattgctcgccaacccactacagAGGTCAGCGACGCGGTGGCCCTGCGCAAGCGCATCGCCGAGAAGTTCGAGCTGGCCAGCCTGCCCGGCACCAGCGAGGAGGACCGGAAGGCGGCGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA