Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22070689|gb|BQ820027.1|BQ820027EST: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTG GGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
genomic: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTGgtgaggcccg ... gcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
EST:
gi|15373073|gb|BI532499.1|BI532499EST: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTG GGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
genomic: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTGgtgaggcccg ... gcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
EST:
gi|15697131|gb|BI721436.1|BI721436EST: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTG GGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
genomic: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTGgtgaggcccg ... gcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
EST:
gi|15694692|gb|BI718997.1|BI718997EST: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTG GGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
genomic: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTGgtgaggcccg ... gcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
EST:
gi|16429675|gb|BI994901.1|BI994901EST: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTG GGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
genomic: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTGgtgaggcccg ... gcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
EST:
gi|16433069|gb|BI998295.1|BI998295EST: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTG GGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
genomic: AGAACGCCAAGGAGCTTATGCTCACGGGTGGATTCCTTTTAATAGTACTGgtgaggcccg ... gcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtggaaggtctgcccgcgactccgcggctgactgcgttggcattcgcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCGAGCAAGCAGGCGAAGCATACCCATACCGCTGCGTGTGGCGACAAGTGCA
ggctgac putative branch site (score: 3)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaggcccgtgaacgctggtgatggaaggagaatggcgtggaaggtctgcccgcgactccgcggctgactgcgttggcattcgcgcgtgcagGGACTTATCAGCTACGGCAGGTCGGACCCGAACCATAACGACTACAAGCCGAGCAAGCAGGCGAAGCATACCCATACCGCTGCGTGTGGCGACAAGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG