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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCGGCATGGAGGACACGGTGGACATCGGGCGGGGCACTCGCGGTCGCCTTTAGGAGGCGACCAGTCAGAGAAGGACGAAGCATACCTCAAGTGGCAGgtgggtgcgctgctctgcatgtgtagcaaacgaagtgcaatattcaagcggcgttgcatgctaaatgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96976
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792954|gb|AV630320.1|AV630320
EST:     CTTTAGGAGGCGACCAGTCAGAGAAGGACGAAGCATACCTCAAGTGGCAG                         GAGAAGCACCCGTGCGTCCTCGCGCACTTTGCTTCCTTCAAAGCAG
genomic: CTTTAGGAGGCGACCAGTCAGAGAAGGACGAAGCATACCTCAAGTGGCAGgtgggtgcgc ... aaatgcgcagGAGAAGCACCCGTGCGTCCTCGCGCACTTTGCTTCCTTCAAAGCAG
EST: gi|22050071|gb|BQ809054.1|BQ809054
EST:     CTTTAGGAGGCGACCAGTCAGAGAAGGACGAAGCATACCTCAAGTGGCAG                         GAGAAGCACCCGTGCGTCCTCGCGCACTTTGCTTCCTTCAAAGCAGCCGTG
genomic: CTTTAGGAGGCGACCAGTCAGAGAAGGACGAAGCATACCTCAAGTGGCAGgtgggtgcgc ... aaatgcgcagGAGAAGCACCCGTGCGTCCTCGCGCACTTTGCTTCCTTCAAAGCAGCCGTG