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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttaaggagggctccgtagggcccgccgcgtggtgcattcccgacacggagcgcgccctgagttgcaaggctcacaacaccaccgcttgccgctgcaccagGTGGCAGTGGAAACGTCGCTTCGCCGGCAAGGCCTCGCCGAGGCAGCGTCGACCTGCCGAGTGGCGCTCAAGGCGTGTCGGACGACCCACTCACCCCCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO96959
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10782941|gb|AV639613.1|AV639613
EST:     ACCAGCAATTGAGGTCTTCAACCACTACTGCAGCCCCAGGCACTCAAGAG                         GTGGCAGTGGAAACGTCGCTTCGCCGGCAAGGCCTCGCCGAGGCAGCGTCG
genomic: ACCAGCAATTGAGGTCTTCAACCACTACTGCAGCCCCAGGCACTCAAGAGgtgggttaag ... gctgcaccagGTGGCAGTGGAAACGTCGCTTCGCCGGCAAGGCCTCGCCGAGGCAGCGTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggagcgcgccctgagttgcaaggctcacaacaccaccgcttgccgctgcaccagGTGGCAGTGGAAACGTCGCTTCGCCGGCAAGGCCTCGCCGAGGCAGCGTCGACCTGCCGAGTGGCGCTCAAGGCGTGTCGGACGACCCACTCACCCCCGC
                      ggctcac  putative branch site (score: 3)