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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgcgcggcgttgcaatggtcatgatattggcgtgactccattgagtttgcgcctggctgtgctttagtcacgtaggccagttgccgttcgtgttcgtactgccatggcgattgcatgctttcgtttgatgcatatgcttgcatcgccaaaaaggccatgtgcgcttgcctcaacactccgcctggccccagGCTCAAGCAGAGTGTCGCCGAGTACCGCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDO96349
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23360077|gb|BU647897.1|BU647897
EST:     GTGGCTTCACGTTGAATCAGATGTTTGCGGG                         GCTCAAGCAGAGTGTCGCCGAGTACCGCAA
genomic: GTGGCTTCACGTTGAATCAGATGTTTGCGGGgtcagtgcgc ... ctggccccagGCTCAAGCAGAGTGTCGCCGAGTACCGCAA
EST: gi|49459108|gb|BP087021.1|BP087021
EST:     GTGGCTTCACGTTGAATCAGATGTTTGCGGG                         GCTCAAGCAGAGTGTCGCCGAGTACCGCAA
genomic: GTGGCTTCACGTTGAATCAGATGTTTGCGGGgtcagtgcgc ... ctggccccagGCTCAAGCAGAGTGTCGCCGAGTACCGCAA
EST: gi|23367255|gb|BU655074.1|BU655074
EST:     GTGGCTTCACGTTGAATCAGATGTTTGCGGG                         GCTCAAGCAGAGTGTCGCCGAGTACCGCAA
genomic: GTGGCTTCACGTTGAATCAGATGTTTGCGGGgtcagtgcgc ... ctggccccagGCTCAAGCAGAGTGTCGCCGAGTACCGCAA
EST: gi|15693288|gb|BI717593.1|BI717593
EST:     GTGGCTTCACGTTGAATCAGATGTTTGCGGN                         GCTCAAGCAGAGTGTCGCCGAG
genomic: GTGGCTTCACGTTGAATCAGATGTTTGCGGGgtcagtgcgc ... ctggccccagGCTCAAGCAGAGTGTCGCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcatcgccaaaaaggccatgtgcgcttgcctcaacactccgcctggccccagGCTCAAGCAGAGTGTCGCCGAGTACCGCAA
                                       ctccgcct  CT-rich tract
           aaaaa  TA-rich tract