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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgttgttggttggttgtgatcgctctaaccgggcacggctcatggagcctcacccgtgggttctcaacatgcgagctgctgggagaccccttaagctccctacatcacaggggcccctagagatgttcttgatgggtagcttacattgactgacattgtgactgggctgactgcagGCACGACGACTTCCATGCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96344
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16431020|gb|BI996246.1|BI996246
EST:     TCATGCAGGCGCGGTGGCCGGACTGGGCGCAGGGAGCACGGCAGCTGACG                         GCACGACGACTTCCATGCAAG
genomic: TCATGCAGGCGCGGTGGCCGGACTGGGCGCAGGGAGCACGGCAGCTGACGgtgagttgtt ... ctgactgcagGCACGACGACTTCCATGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgttcttgatgggtagcttacattgactgacattgtgactgggctgactgcagGCACGACGACTTCCATGCAAG
                   ttacatt  TA-rich tract