1 5' 3' | 2 5' 3' | 3 5' 3' |
...cggggttgggctggtggtggtggttctggggtgggggtaggaggactgggggcgggagtgcttgggtccgtatgttgacctctgcttggtctgcacgcagATACGCCTGCAAACCGGACGTTGAGTCTTTGGCTCTCCCATGCGGCCAAGAACGCATGTGGGCACTGCATGCTGCTGGGAGAGACTGGCCCTAACGGCCA
species | Chlamydomonas reinhardtii |
transcript | EDO96324 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGGGCCGGACCTTCGGGCACAAGATGTTTCTGGGCGGTATCTTTGCTG ATACGCCTGCAAACCGGACGTTGAGTCTTTGGCTCTCCCATGCGGCCAAGAEST: gi|15704259|gb|BI728564.1|BI728564
genomic: TTCGGGCCGAACCTTTGGGCACAAGATGTTTCTGGGCGGTATCTTTGCTGgtgagtgggc ... ctgcacgcagATACGCCTGCAAACCGGACGTTGAGTCTTTGGCTCTCCCATGCGGCCAAGA
EST: TTCGGGCCGGACCTTCGGGCACAAGATGTTTCTGGGCGGTATCTTTGCTG ATACGCCTGCAAACCGGACGTTGAGTCTTTGGCTCTCCCATGCGGCCAAGA
genomic: TTCGGGCCGAACCTTTGGGCACAAGATGTTTCTGGGCGGTATCTTTGCTGgtgagtgggc ... ctgcacgcagATACGCCTGCAAACCGGACGTTGAGTCTTTGGCTCTCCCATGCGGCCAAGA
ctgggggcgggagtgcttgggtccgtatgttgacctctgcttggtctgcacgcagATACGCCTGCAAACCGGACGTTGAGTCTTTGGCTCTCCCATGCGGCCAAGAACGCATGTGGGCACTGCATGCTGCTGGGAGAGACTGGCCCTAACGGCCA
tgttgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggggttgggctggtggtggtggttctggggtgggggtaggaggactgggggcgggagtgcttgggtccgtatgttgacctctgcttggtctgcacgcagATACGCCTGCAAACCGGACGTTGAGTCTTTGGCTCTCCCATGCGGCCAAGAACGCATGTGGGCACTGCATGCTGCTGGGAGAGACTGGCCCTAACGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -ttgggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtatgt