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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttggcggccgcatctagtgggagaacgatcgtgcgggcgagtgggagttgtgccttcatgcatgccgtcattatggttttcctgttacggaaagagtggcatgccgtgactaaccaggaactgcgttaccatattgcgcacgtgttcccaccacgcagAGGGCTGCAGTAATGCCACATGCTCGGCCGACTTCGCGCCTGTGTGTGGCGTCGACGGCGTCACGTACGAGAATGCATGCAGGCTGGGCTGCACGGGCGT

Basic information

species Chlamydomonas reinhardtii
transcript EDO95794
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtgactaaccaggaactgcgttaccatattgcgcacgtgttcccaccacgcagAGGGCTGCAGTAATGCCACATGCTCGGCCGACTTCGCGCCTGTGTGTGGCGTCGACGGCGTCACGTACGAGAATGCATGCAGGCTGGGCTGCACGGGCGT
    gactaac  putative branch site (score: 1)
                                         ttcccacc  putative PPT
                           atatt  TA-rich tract