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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgctggcgggtaagtggcgaccaggacttggcacctgccgcaaaaggcccttgcttgacatcaacctccataatgctgtcccggccgcttgcttgcagGCCTAAACCAGACCTGTGACTTCGGGTGCCGTTTCGTGCAAGCCGGTACCATAATGCATCAGCGACGTGATTATGTTGTGCGGGTTCGGGGTGGCTGTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO95678
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15694679|gb|BI718984.1|BI718984
EST:     CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGG                         A
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|15694679|gb|BI718984.1|BI718984
EST:     CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGG                         A
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|15691860|gb|BI716165.1|BI716165
EST:     CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGG                         A
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|15691860|gb|BI716165.1|BI716165
EST:     CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGG                         A
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|14228078|gb|BG846894.1|BG846894
EST:     CACCTTGTTTGCGTTCATCGACA-CCAGCACGTACGGCAGGCGCATATGG                         N
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|14228078|gb|BG846894.1|BG846894
EST:     CACCTTGTTTGCGTTCATCGACA-CCAGCACGTACGGCAGGCGCATATGG                         N
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|14228078|gb|BG846894.1|BG846894
EST:     CACCTTGTTTGCGTTCATCGACA-CCAGCACGTACGGCAGGCGCATATGG                         N
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|15693623|gb|BI717928.1|BI717928
EST:     CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGG                         A
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-
EST: gi|15693623|gb|BI717928.1|BI717928
EST:     CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGG                         A
genomic: CACCTTGTTTGCGTTCATCGACAACCAGCACGTACGGCAGGCGCATATGGaggtagagga ... ttgcttgcag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggcccttgcttgacatcaacctccataatgctgtcccggccgcttgcttgcagGCCTAAACCAGACCTGTGACTTCGGGTGCCGTTTCGTGCAAGCCGGTACCATAATGCATCAGCGACGTGATTATGTTGTGCGGGTTCGGGGTGGCTGTGC
         gcttgac  putative branch site (score: 4)
                                            cttgctt  putative PPT
                          ataat  TA-rich tract