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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTCGATCTCAATTGTTCCGACCAAACAAGATGAAGAGATCACGTGGAAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataagactcttgtaatataaactcttatacaattctgaaactgcaattatgtttgttgatgatcattagaaagatactaatgaatttttttatta...

Basic information

species Arabidopsis thaliana
transcript AT5G65310.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057340|gb|DR353097.1|DR353097
EST:     AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAG                         ACAAACAAATAAGCCCAAGACCAACAACTACCGGCTT
genomic: AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataag ... attttaacagACAAACAAATAAGCCCAAGACCAACAACTACCGGCTT
EST: gi|86057332|gb|DR353089.1|DR353089
EST:     AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAG                         ACAAACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCG
genomic: AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataag ... attttaacagACAAACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCG
EST: gi|86057344|gb|DR353101.1|DR353101
EST:     AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAG                         ACAAACAAATAAGCCCAWGACCARCAACTACCGGCTTTCTCTATTCCGGCG
genomic: AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataag ... attttaacagACAAACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCG
EST: gi|86057339|gb|DR353096.1|DR353096
EST:     AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAG                         ACAAACAAATA
genomic: AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataag ... attttaacagACAAACAAATA
EST: gi|86057337|gb|DR353094.1|DR353094
EST:     AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAG                         ACAAACAAATAA
genomic: AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataag ... attttaacagACAAACAAATAA
EST: gi|86057334|gb|DR353091.1|DR353091
EST:     AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAG                         ACAAACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCG
genomic: AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataag ... attttaacagACAAACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCG
EST: gi|86057342|gb|DR353099.1|DR353099
EST:     AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAG                         ACAAACAAATAAG
genomic: AAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataag ... attttaacagACAAACAAATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTTTCGATCTCAATTGTTCCGACCAAACAAGATGAAGAGATCACGTGGAAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGgtaaaataagactcttgtaatataaactcttatacaattctgaaactgcaattatgtttgttgatgatcattagaaagatactaatgaatttttttatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagata