Sequence
atgc intronic sequence ATGC exonic sequenceATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAGgtgagcaggtatctttttcttatgacttatgagtatttgtaaagtttgtaatatgaatagagaactaagtagcttcatcgccttttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G64560.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G64560.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G35260.2 (Glycine max), 5'ss of exon 5
ATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAGgtgagc--aggtatctttttcttatgacttatgagtatttgtaaagtttgtaatatgaatagagaactaagtagcttcatcgccttttgcag-----------
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ATTAGTAGTCGTAATTTGGACAGAGTTCGTAAACTGAAGAGTGCAATGACAAGGCTGACTGCTAGGGTTCAAAAGgtatgtcaagttttactatgccagggaaaaatttgcacatggaaaaaaactattttcttctatg---taaatatattctccgccctctgcctctcaatgctgt
upper sequence: AT5G64560.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G32350.1 (Glycine max), 5'ss of exon 5
ATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAGgtgagc--aggtatctttttcttatgacttatgagtatttgtaaagtttgtaatatgaatagagaactaagtagcttcatcgccttttgcag-----------
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ATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACAAGGCTGACTGCTAGGGTTCAAAAGgtaagtcaagttttactatgctagggaaaaatttgcacatggaaaaaaactattttcttctatg---taaatatattctccaccctctgcctctcaatgctgt
upper sequence: AT5G64560.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0020g04720.t01 (Vitis vinifera), 5'ss of exon 5
ATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAGgtgagcaggtatctttttcttatgac----ttatgagtatttgtaaagtttgtaatatgaatagagaactaa----gtagcttcatcgccttttgcag---
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ATTAGTAGCCTTAATTTGGATCGGGTTCGTAAATTGAAGAGTGCAATGACGAGATTGACTGCTCGGGTTCAAAAGgtatgcttgggttcaaaaggtgtgatcacttcttcaatggtaatagaacatgta-catcactttcctactttcctcgtaattccaactaatgtggcaggaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164215659|gb|ES110040.1|ES110040EST: TTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAG GTAAGAGATGAACTCGAACAGTTGCTGGATGA
genomic: TTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAGgtgagcaggt ... ccttttgcagGTAAGAGATGAACTCGAACAGTTGCTGGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAGTAGCCGTAATTTGGATAGAGTTCGGAAATTGAAGAGTGCCATGACTCGGTTGACAGCTCGGGTTCAAAAGgtgagcaggtatctttttcttatgacttatgagtatttgtaaagtttgtaatatgaatagagaactaagtagcttcatcgccttttgcag
- - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC