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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaccagaattctattcgcatgaggatgaaataaagatctctctcaagattaacttatgtttatcggggtttttggttgttgcagGTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATGTCGTACGCTAGGTACAAAGGACTTGTGGGATCTTGATGGCTGAATTTGG

Basic information

species Arabidopsis thaliana
transcript AT5G64560.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083384|gb|DR379143.1|DR379143
EST:     TGAACATTCCATACACATGGAACGACGGTCATGGATACATGTTCAAATAC                         GTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG
genomic: TGAACATTCCATACACATGGAACGACGGTCATGGATACATGTTCAAATACgtaagaaacc ... gttgttgcagGTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG
EST: gi|164011258|gb|ES208955.1|ES208955
EST:     TGAACATTCCATACACATGGAACGACGGTCATGGATACATGTTCAAATAC                         GTGGTGGGCTTAGACGGGGAACACTTTGTGTAGTCGTGTTTGTGATC
genomic: TGAACATTCCATACACATGGAACGACGGTCATGGATACATGTTCAAATACgtaagaaacc ... gttgttgcagGTGGTGGGCTT-GACGGGGA-CACTTTGTGTAGTCGTGTTTGTGATC
EST: gi|86078071|gb|DR373828.1|DR373828
EST:     TGAACATTCCATACACATGGAACGACGGTCATGGATACATGTTCAAATAC                         GTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG
genomic: TGAACATTCCATACACATGGAACGACGGTCATGGATACATGTTCAAATACgtaagaaacc ... gttgttgcagGTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagatctctctcaagattaacttatgtttatcggggtttttggttgttgcagGTGGTGGGCTTGACGGGGACACTTTGTGTAGTCGTGTTTGTGATCATAATGTCGTACGCTAGGTACAAAGGACTTGTGGGATCTTGATGGCTGAATTTGG
                 gattaac  putative branch site (score: 2)
                  attaacttatgtttat  TA-rich tract