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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcatcgccagttttggcgggaaaatgtttctgcggtggtttgtttttgattgaatctgaaacttactattgtcttgtgctctcgattacattcttcagATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGACTTCTCTGGTGATTTGTTATTTTCTTTGTGGTTTTTGGTGATTGCAAATC

Basic information

species Arabidopsis thaliana
transcript AT5G64540.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116432274|gb|EG474866.1|EG474866
EST:     CTATCGAACCAGAGGAAGACGAATTAGCTTCTCGATCACGATTCTTTTAG                         ATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
genomic: CTATCGAACCAGAGGAAGACGAATTAGCTTCTCGATCACGATTCTTTTAGgtatgtgatt ... cattcttcagATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgattgaatctgaaacttactattgtcttgtgctctcgattacattcttcagATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGACTTCTCTGGTGATTTGTTATTTTCTTTGTGGTTTTTGGTGATTGCAAATC
                aacttac  putative branch site (score: 2)
                                             cattcttc  putative PPT
                   ttactatt  TA-rich tract