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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctatatataattagcctttgtttataaatcattaatgatcttgtagtattaactcgcttcttgattcatttgctagGAGGAGCTCTGTTGCAGCTCAGAGATTCGCTTAATGATTCGAGCAATCGTCTAAAATGGACACGCGATTTTGTGAGCCCTTGCTATAGTTGGTCTTATGT

Basic information

species Arabidopsis thaliana
transcript AT5G63710.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124726056|gb|EH817458.1|EH817458
EST:     GGGAATCACTTCGTCAACAACTCAACCAGATATCGAAG                         GAGGAGCTCTGTTGCAGCTCAGAGATTCG
genomic: GGGAATCACTTCGTCAACAACTCAACCAGATATCGAAGgtctatatat ... catttgctagGAGGAGCTCTGTTGCAGCTCAGAGATTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataaatcattaatgatcttgtagtattaactcgcttcttgattcatttgctagGAGGAGCTCTGTTGCAGCTCAGAGATTCGCTTAATGATTCGAGCAATCGTCTAAAATGGACACGCGATTTTGTGAGCCCTTGCTATAGTTGGTCTTATGT
                                           ttcattt  CT-rich tract
     aatcattaat  TA-rich tract