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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGGGTGgtaatgacatttcgagttacctttctaattttctatatagagaaatatgcaactgaactaaaataggaagtactcatgtctacttgagttccag

Basic information

species Arabidopsis thaliana
transcript AT5G63080.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63080.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G35940.1 (Glycine max), 5'ss of exon 9
GAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGGGTGgtaa--tgacatttcgagttacctttctaattttctatatagagaaatatgcaactgaactaaaataggaagtactcatgtctacttgagttccag---
|| || ||||||||||| |||||||||||| |||| || || ||||| |||||||||||||  ||| |  |  | | |  |   || ||     |  ||   |      ||   || | || || |     |||||| ||  |   | |  |    
GAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGgtaaattgagaaattaaatgaaatacatatttgagagtcaagctcagcgataaatataattgaactaagtttatctcatgacttttcatgctataacag

upper sequence: AT5G63080.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G19010.1 (Glycine max), 5'ss of exon 11
GAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGGGTGgtaa--tgacattt----cgagttacctttctaattttctatatagagaa-atatgcaactgaactaaaataggaagtactcatgtctacttgagttccag
|| || || |||||||| |||||||||||| |||| || || ||||| |||||||||||||  ||| |  |     ||  ||| | | | |   || |  |  | || | ||  || ||||||||  |   |  |  | |  | |  ||   |  |||
GAGGATACGATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGgtaaattgagaaatgcaatgaactacatatttgagactcaagctctacaataaatataattgaactaagttt--atctcatgaattttcattctataacag