Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgcctcttctttctaaactaatcacggaaatgcaaaaattggatactacactatcaacttttttcttttgttctctttatctcgtgaatttccatttaatgagtttagttataatgtggaacagAAACTTGTGATAAAGACAAAGAGCGTGAAATACATGCCGTTCTTCCTATCATTAGCCAACTTCATGAACGGTGTCGTTTGGGTCATTTATGCATGTCTTA

Basic information

species Arabidopsis thaliana
transcript AT5G62850.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G62850.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os01g42110.1 (Oryza sativa), 3'ss of exon 3
gtatgatgcctcttctttctaaactaatcacggaaatgcaaaaattggatactacactatcaacttttttcttttgttctctttatctcgtga-atttccatttaatgagtttagttataatg-----tggaacagAAACTTGTGATAAAGACAAAGAGCGTGAAATACATGCCGTTCTTCCTATCATTAGCCAACTTCATGAACGGTGTCGTTTGGGTCATTTATGCATGTCTTA
                                    |  | | ||  ||| | |   ||    ||   |   |  | ||  |        | | ||||  || |||  || ||| || | ||           |||      ||||||||||| ||||||||| | ||||||||||||||||| ||  | |    |||| | ||||| |||   |||      || ||     |  
------------------------------------ttaatatatatgattccatcttaatttctagctagctaggatcattaatcaatataagatttttatctaacaagattaattgtgattattatcactgcagGGGAAAGTGATAAAGACGAAGAGCGTGGAGTACATGCCGTTCTTCCTGTCGCTGGTGTGCTTCCTCAACGGCGTCTGCTGGACGGCCTACGCGCTCATCC

upper sequence: AT5G62850.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os01g42090.1 (Oryza sativa), 3'ss of exon 3
gtatgatgcctcttctttctaaactaatcacggaaatgcaaaaattggatactacactatcaacttttttcttttgttctctttatctcgtgaatttccatttaatgagtttagttataatgtggaacagAAACTTGTGATAAAGACAAAGAGCGTGAAATACATGCCGTTCTTCCTATCATTAGCCAACTTCATGAACGGTGTCGTTTGGGTCATTTATGCATGTCTTA
                         | |  |     |  || |||  | ||| | |||   |  | |    |  |  | |  |||  |  |||  ||  | | || ||| ||| | |     || |   ||||   ||||||||||| ||||||||  | ||||||||||||||||| ||  | |    |||| | ||||| ||    |||      || ||     |  
-------------------------attttctttgttataacaat--gttacaatacttaaatttctaggatcattatataattaattaatgagattttaatcaacgagattattcactcactgcagGGGAAA---GTGATAAAGACGAAGAGCGTAGAGTACATGCCGTTCTTCCTGTCGCTGGTGTGCTTCCTCAACGGCGTTTGCTGGACGGCCTACGCGCTCATCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctctttatctcgtgaatttccatttaatgagtttagttataatgtggaacagAAACTTGTGATAAAGACAAAGAGCGTGAAATACATGCCGTTCTTCCTATCATTAGCCAACTTCATGAACGGTGTCGTTTGGGTCATTTATGCATGTCTTA
                        atttaat  putative branch site (score: 4)
                        atttaatgagtttagt  TA-rich tract