1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcccaagcattcagtgaacaacatagtaatagaccaattaggaaattcgactttgataattgaactttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAG
species | Arabidopsis thaliana |
transcript | AT5G62540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAACAAACCCCCGATTGTTCGGTTTGTTT--CGGATGTTTCATCCAAACA TTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCEST: gi|301501094|gb|HO206634.1|HO206634
genomic: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACAgtaagcccaa ... tttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCC
EST: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACA TTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCEST: gi|301501129|gb|HO206669.1|HO206669
genomic: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACAgtaagcccaa ... tttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCC
EST: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACA TTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCEST: gi|301501135|gb|HO206675.1|HO206675
genomic: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACAgtaagcccaa ... tttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCC
EST: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACA TTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCEST: gi|86085108|gb|DR380867.1|DR380867
genomic: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACAgtaagcccaa ... tttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCC
EST: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACA TTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCC
genomic: GAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACAgtaagcccaa ... tttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCC
acatagtaatagaccaattaggaaattcgactttgataattgaactttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAG
ctttgat putative branch site (score: 5)
tttgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcccaagcattcagtgaacaacatagtaatagaccaattaggaaattcgactttgataattgaactttggtgcagTTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG