Sequence
atgc intronic sequence ATGC exonic sequence...agttctttctatatggagtaaatattcattttttgaacataaattaaagactctatatgaagtttattggtttgctttggctactttggaaaattttcagGCGAGGAGAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAGTGAGAAAACAAACTGCAGATATGCTTAGAAGGA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G62070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G62070.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA09G26630.1 (Glycine max), 3'ss of exon 1
-agttctttctatatggagtaaatattcattttttgaacataaattaaagactctatatgaagtttattggtttgctttggctactttggaaaattttc--agGCGAGGAGAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAGTGAGAAAACAAACTGCAGATATGCTTAGAAGGA
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aaaaatgtgataggtgaatttcatggataggttttacgaacagtat---gatatggaatggaattttatgttttactgatatttttttatatgaatttggaagGCAAGGAGAGCATTGAGAGCACTTAAAGCACTGGTGAAGTTGCAAGCATTGGTGAGGGGTCACATTGTGAGAAAGCAAACTTCAGATATGCTAAGGCGCA
upper sequence: AT5G62070.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA10G38310.1 (Glycine max), 3'ss of exon 1
---agttctttctatatggagtaaatattcattttttgaacataaattaaagactctatatgaagtttattggtttgctttggctactttggaaaattttca-gGCGAGGAGAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAGTGAGAAAACAAACTGCAGATATGCTTAGAAGGA
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ctcaattattggta-gtattgtaagatttcattgcttgtagaaggtcctaaattacaatattaa-tttgttaaaaaaagt--gttttttgggtgaatttggaagGCAAGGAGGGCATTGAGAGCGCTTAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCAGATATGCTGAGGCGCA
upper sequence: AT5G62070.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv16s0100g00620.t01 (Vitis vinifera), 3'ss of exon 1
-agttctttctatatggagtaaatattcattttttgaacataaattaaagactctatatgaagtttattggtttgctttggctactttggaaaattttcagGCGAGGAGAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAGTGAGAAAACAAACTGCAGATATGCTTAGAAGGA
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cagatttggaatgagatggtcaaaacttttcatattagttttgaacagttttgatctctaaggggaaaagggt-gatctgattatttgggataatgtgtagGCAAGGAGGGCACTGAAGGCACTGAAAGCGCTGGTGAAGCTTCAGGCACTGGTGAGAGGCCACATAGTGCGGAAACGAAGTGCAGATATGCTTAGGCGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125144662|gb|EL180212.1|EL180212EST: AGGAGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCTG GCGAGGAGAGCATTACG
genomic: AGGAGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCTGgttagtttac ... aaattttcagGCGAGGAGAGCATTACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagactctatatgaagtttattggtttgctttggctactttggaaaattttcagGCGAGGAGAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAGTGAGAAAACAAACTGCAGATATGCTTAGAAGGA
ttttc CT-rich tract
tatatgaagtttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttctttctatatggagtaaatattcattttttgaacataaattaaagactctatatgaagtttattggtttgctttggctactttggaaaattttcagGCGAGGAGAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAGTGAGAAAACAAACTGCAGATATGCTTAGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - acataaa