1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgagatatttcatctatgagttcttgctatttttggctaaatctttgagttaacccctctgtgattcgtacctgttgagatattttctaatgaactttgtcggtttccattgttttatgattagGTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGATCTTCCGTCAAAGCTTCTCTGTCGAGTTATTAATGTAGATTTAAAG
species | Arabidopsis thaliana |
transcript | AT5G62000.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAG GTGGAGGCTTCGACGAEST: gi|116380590|gb|EG423182.1|EG423182
genomic: CGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAGgtgagatatt ... ttatgattagGTGGAGGCTTCGACGA
EST: CTAGACAAGACGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAG GTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGAT
genomic: CTAGACAAGACGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAGgtgagatatt ... ttatgattagGTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGAT
acctgttgagatattttctaatgaactttgtcggtttccattgttttatgattagGTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGATCTTCCGTCAAAGCTTCTCTGTCGAGTTATTAATGTAGATTTAAAG
ttctaat putative branch site (score: 2)
ttgtttt putative PPT
atattttctaatgaa TA-rich tract