Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116397191|gb|EG439783.1|EG439783EST: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAG ATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
genomic: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGgttactttca ... ttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
EST:
gi|116396282|gb|EG438874.1|EG438874EST: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAG ATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
genomic: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGgttactttca ... ttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
EST:
gi|116396284|gb|EG438876.1|EG438876EST: CTCTCTGACCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAG ATTGTGCGCTGAGGTTCATATTGGCAGGCAAGGTCATGAAATCAGGACTTG
genomic: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGgttactttca ... ttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
EST:
gi|116397194|gb|EG439786.1|EG439786EST: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAG ATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
genomic: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGgttactttca ... ttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
EST:
gi|116396261|gb|EG438853.1|EG438853EST: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAG ATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
genomic: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGgttactttca ... ttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
EST:
gi|86058794|gb|DR354551.1|DR354551EST: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAG ATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
genomic: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGgttactttca ... ttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
EST:
gi|116396285|gb|EG438877.1|EG438877EST: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAG ATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
genomic: CTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGgttactttca ... ttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttaagttggctttagctagttttgaagtttgaacttgtgtggtttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTGCACTGGTCCCGGGAGTGGTTCAAGAAGTGCGACTCATGTTTGGAAAAGA
tttgttt CT-rich tract
tagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attgattggaacagaagatccagtgagatttgaaaaaaaattgagacttaagttggctttagctagttttgaagtttgaacttgtgtggtttgtttgcagATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTGCACTGGTCCCGGGAGTGGTTCAAGAAGTGCGACTCATGTTTGGAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT