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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttttaagctcttgtctgatacgttgtagtattgtaagtgttatgtctcgagggttgtgattttgattgttgctaatgctagttgttccattttgttcatcatcttctttccagGAGAAGAAGCGGAACACTTTAAGGGACTTTTTGAATGTATCAGGTCCAATGGGTGTTACACATTTCCTTATGCTTTCGAAAACAGCGTCTTCACTGTCTC

Basic information

species Arabidopsis thaliana
transcript AT5G61770.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070374|gb|DR366131.1|DR366131
EST:     AGATGGATTTGAGGAAGCTCATGCTTCCCTACACTGCTCTCAGTCTTAAG                         GAGAAGAAGCCGGAACACTTTAAGGGACTTTTTGAATGTATCAGGTCCAAT
genomic: AGATGGATTTGAGGAAGCTCATGCTTCCCTACACTGCTCTCAGTCTTAAGgtctgtttta ... ttctttccagGAGAAGAAGC-GGAACACTTTAAGGGACTTTTTGAATGTATCAGGTCCAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgattgttgctaatgctagttgttccattttgttcatcatcttctttccagGAGAAGAAGCGGAACACTTTAAGGGACTTTTTGAATGTATCAGGTCCAATGGGTGTTACACATTTCCTTATGCTTTCGAAAACAGCGTCTTCACTGTCTC
           tgctaat  putative branch site (score: 2)
                          ttccattttgttcatc  putative PPT
                              attttgtt  TA-rich tract