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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcctaataaaaatctgttttttggttcttcaaaattcgtctctatggttgtggagtgtgtattattcagaaatttagaatcctatgttttaaattctaaattttgcttctttttcttattggattggtctcggtggatattgagttctgctttatgaaatttttatgttatagGCTAAGGATGCGTATTACAATGGCAAGCCTTTGATAGTTGATGACATGTTTGACAGAGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G59400.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125056656|gb|EL126311.1|EL126311
EST:     GACCTATTGATTCTGCTCGCAAAGAAACTCTAGAAGCTCTTTATCGCCAA                         GCTAAGGATGCGTATTACAATGGCAAGCCTTTGAT
genomic: GACCTATTGATTCTGCTCGCAAAGAAACTCTAGAAGCTCTTTATCGCCAAgtacgcctaa ... tatgttatagGCTAAGGATGCGTATTACAATGGCAAGCCTTTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggattggtctcggtggatattgagttctgctttatgaaatttttatgttatagGCTAAGGATGCGTATTACAATGGCAAGCCTTTGATAGTTGATGACATGTTTGACAGAGTTGAG
                                         tttttat  CT-rich tract
                                tttatgaaatttttat  TA-rich tract