1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAGgttagagtcggtttactctaaaagctgtgataaatcctgcatttagttcatgttttggttccttaatgtgtgttgtgtttgtattaaacgcag
species | Arabidopsis thaliana |
transcript | AT5G59290.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAG CTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGATEST: gi|86075538|gb|DR371295.1|DR371295
genomic: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAGgttagagtcg ... ttaaacgcagCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGAT
EST: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAG CTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGATEST: gi|124890126|gb|EH969028.1|EH969028
genomic: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAGgttagagtcg ... ttaaacgcagCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGAT
EST: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAG CTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGATEST: gi|124878334|gb|EH957771.1|EH957771
genomic: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAGgttagagtcg ... ttaaacgcagCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGAT
EST: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAG CTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGEST: gi|125063470|gb|EL131437.1|EL131437
genomic: GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAGgttagagtcg ... ttaaacgcagCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAG
EST: CGGTTAAGGAG CTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGAT
genomic: CGGTTAAGGAGgttagagtcg ... ttaaacgcagCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCAGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGTTCACAATGGTGGAACTGGCTGAGACGGTTAAGGAGgttagagtcggtttactctaaaagctgtgataaatcctgcatttagttcatgttttggttccttaatgtgtgttgtgtttgtattaaacgcag
- - - - - - TGGTGG
- - - - - - GGTGGA
- - - - - - - - - - - - - - - - - AAGGAG