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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTTGTCGTGAGACGAGTCGTGAAACGGGCCGTGGCCAGAGAGCCTCGCATGGGTGCTTCTCTCCTTCGTTTGTTCTTCCATGATTGTTTTGTCAATgtaaggcactttttttcaatgcaaaaacgaagcatgctttgtatgttcccatgaattactcctaaaacttagtaaatgctaagcatatgatttgatag

Basic information

species Arabidopsis thaliana
transcript AT5G58390.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58390.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv06s0004g07770.t01 (Vitis vinifera), 5'ss of exon 1
GTTCCTTGTCGTGAGACGAGTCGTGAAACGGGCCGTGGCCAGAGAGCCTCGCATGGGTGCTTCTCTCCTTCGTTTGTTCTTCCATGATTGTTTTGTCAATgtaaggcactt--tttttcaatgcaaaaacg-aagcatgctttgtatgttcc-catgaattactcctaaaacttagtaaatgctaagcatatgatttgatag
 ||   |   |||| |   |  ||  ||  ||| ||  | | ||| |  |||||||| ||||||||||| ||| | |||||||||||||| |||||||||||||  |   |   || |   |   |        || ||  |  |  ||    ||||  | |    | ||   ||  |||        ||| | |   ||||
CTTTGATACTGTGAAATCTGGAGTTCAATCGGCGGTTTCGAAAGAACGCCGCATGGGCGCTTCTCTCCTCCGTCTCTTCTTCCATGATTGCTTTGTCAATgtaatccttctagcttcttgttcttagtgtatgggcctgagtgttgggtcatgcatgtttcatatttgaagtctaagaaaaatcttagataaggtc--atag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124946185|gb|EL022129.1|EL022129
EST:     CTTCTCTCCTTCGTTTGTTCTTCCATGATTGTTTTGTCAAT                         GGGTGTGACGGATCCTTACTGTTGGATGACACACCGTACTTTTTTGGGAGA
genomic: CTTCTCTCCTTCGTTTGTTCTTCCATGATTGTTTTGTCAATgtaaggcact ... gatttgatagGGGTGTGACGGATCCTTACTGTTGGATGACACACCGT-CTTTTTTGGGAGA