Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124716473|gb|EH807875.1|EH807875EST: TCTCAAGAACTACCCTGTTTGCCCT GCTCATCTTGGGAAACAACCTATAGCAAGATGTTATTATCCACCAGA
genomic: TCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGA
EST:
gi|86018485|gb|DR314231.1|DR314231EST: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCT GCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
genomic: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
EST:
gi|86018480|gb|DR314226.1|DR314226EST: CCTTGGTAGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCT GCTCATCTTGGGAAACAACCTATAGCA
genomic: CCTTGGT-GACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagGCTCATCTTGGGAAACAACCTATAGCA
EST:
gi|86018483|gb|DR314229.1|DR314229EST: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCT GCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
genomic: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
EST:
gi|86018481|gb|DR314227.1|DR314227EST: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGNTTGCCCT GCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
genomic: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
EST:
gi|86018484|gb|DR314230.1|DR314230EST: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCT GCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
genomic: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTT
EST:
gi|116477443|gb|EG520035.1|EG520035EST: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCT GCTCATCTTGGGAAAC
genomic: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagGCTCATCTTGGGAAAC
EST:
gi|124979959|gb|EL052952.1|EL052952EST: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCT GACTCATCTTGGGAAACAACCTATAGCAAG
genomic: GCCTTGGTGACCCTGAGACTACCCTTCTCAAGAACTACCCTGTTTGCCCTgtatgtctac ... cttcttttagG-CTCATCTTGGGAAACAACCTATAGCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaatcttgtttcaatataattttgtgtgaaccatgtatcttctcttcttttagGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTAT
ctttaat putative branch site (score: 4)
ccatgtatcttctctt putative PPT
ttgtttcaatataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtctactttcatccatcttctactttaatcttgtttcaatataattttgtgtgaaccatgtatcttctcttcttttagGCTCATCTTGGGAAACAACCTATAGCAAGATGGTATTATCCACCAGAAGTTGATTACAGGCTCGCTGCTCTTCCCCCTAGTGCCAAGGGTCTTGTTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT