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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgatggagaatgagtttccttttaataaggaaagctgaaaaattcaacatttatattatttctttcgttgacaacatgcagctttatgcagGCTCACCGAGCGTGCATCGAAAGGGAAATCATTTCCCTTCTGGATCATCCATTCCTTCCTACTCTCTACGCTTCTTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G58140.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58140.4 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 13
-------------------------------------------------gtatatgatggagaatgagtttccttttaataaggaaagctgaaaaattca-------acatttat--attatttctttcgttgacaacatgc-------agctttatgcagGCTCACCGAGCGTGCATCGAAAGGGAAATCATTTCCCTTCTGGATCATCCATTCCTTCCTACTCTCTACGCTTCTTTTCAG
                                                 | |    ||| | | | |  |   | ||| |      | | || | |||||        || | ||  | ||| |  ||    ||    |||        | |  | |||||| ||||||||| ||||| |||||||||||||||||  | || |||||||| |||||||| || || ||| |||||||||||
gtctgacacttaatgaaaaccttgatttggggcattttatatttggtgtgaactctatgcacactcatgtgtttcttagttcctgcaacagagacattcattcaaccgcagtgatcaaatatgtgattgaaggatctaatgtcattgtgaaccatgtgcagGTTCACCGAGCATGCATGGAAAGGGAAATCATTTCAATGCTCGATCATCCGTTCCTTCCAACGCTGTACTCTTCTTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaattcaacatttatattatttctttcgttgacaacatgcagctttatgcagGCTCACCGAGCGTGCATCGAAAGGGAAATCATTTCCCTTCTGGATCATCCATTCCTTCCTACTCTCTACGCTTCTTTTCAG
                             cgttgac  putative branch site (score: 4)
     attcaacatttatatt  TA-rich tract