1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGCTGATTCACTTGAAAAAGGAACAGAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGgtttatactgctccagctctttccataaacactctgagataatgtaatttttttaaggtcaagaaaactgataacaaatgtgaaagtgtag
species | Arabidopsis thaliana |
transcript | AT5G58030.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAG GTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGTEST: gi|19741160|gb|AU226513.1|AU226513
genomic: GAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGgtttatactg ... gaaagtgtagGTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGT
EST: GTGAAAAGGAGCTTCTTGTTAACAG GTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCCTTTGTEST: gi|19874921|gb|AU235752.1|AU235752
genomic: GTGAAAAGGAGCTTCTTGTTAACAGgtttatactg ... gaaagtgtagGTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGT
EST: GAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAG GTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGTEST: gi|47829107|gb|CK118791.1|CK118791
genomic: GAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGgtttatactg ... gaaagtgtagGTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGT
EST: GAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGGTAACAG GTTCATTTCGATTCCAAAAGACATGGGGACATTCAACTGNCG-AGCGTTTTEST: gi|125293774|gb|EL307859.1|EL307859
genomic: GAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGgtttatactg ... gaaagtgtagGTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTG-CGGAGCGTTT-
EST: GAAAAGGAGCTTCTTGTTAACAG GTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGT
genomic: GAAAAGGAGCTTCTTGTTAACAGgtttatactg ... gaaagtgtagGTTCATTTCGATTCCAAAAGACATGGGAACATTCAACTGCGGAGCGTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTGATTCACTTGAAAAAGGAACAGAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGgtttatactgctccagctctttccataaacactctgagataatgtaatttttttaaggtcaagaaaactgataacaaatgtgaaagtgtag
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT