1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttcaaatctgattccttaattcttgatgtcacgttagtttggtttccttgtcactaagtggaacatttaacctatgtgtgtgccattgtcatttcgtagGTAATCCCAAGAAGCTACAACAGGTATTATCCAAACCCTCTCCCTCAGACAGCTGTTCTCAAGAATCCGGAAGGAAGATTTTGGAATGTCCAATGGACAA
species | Arabidopsis thaliana |
transcript | AT5G57720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCAGATTTCCTCAAGATNTTCAACTCCCATGAAGATTCTCAACTTTTG GTAATCCCAAGAAGCTACAACAGGTATTATCCAAACCCTCTCCCTCAGACA
genomic: ATCCAGATTTCCTCAAGATCTTCAACTCCCATGAAGATTCTCAACTTTTGgtaagtaact ... catttcgtagGTAATCCCAAGAAGCTACAACAGGTATTATCCAAACCCTCTCCCTCAGACA
tccttgtcactaagtggaacatttaacctatgtgtgtgccattgtcatttcgtagGTAATCCCAAGAAGCTACAACAGGTATTATCCAAACCCTCTCCCTCAGACAGCTGTTCTCAAGAATCCGGAAGGAAGATTTTGGAATGTCCAATGGACAA
atttaac putative branch site (score: 3)
tcatttc putative PPT
aacatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcaaatctgattccttaattcttgatgtcacgttagtttggtttccttgtcactaagtggaacatttaacctatgtgtgtgccattgtcatttcgtagGTAATCCCAAGAAGCTACAACAGGTATTATCCAAACCCTCTCCCTCAGACAGCTGTTCTCAAGAATCCGGAAGGAAGATTTTGGAATGTCCAATGGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- tcaaatc
- - - - - - - - - - - - - - - - - - agtttgg