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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatttgttagaaatataaatatttagtgtattgtataatgttattgttattggttttgatgaaatgaatttcatttcctattagGTTTGCCTCCATTGATTTGGGACGGTAAACTAGCGAGCTACGCAACATGGTGGGCTAACCAGAGGCGTTACGACTGCTCCTTAACCCATTCCACCGGCCC

Basic information

species Arabidopsis thaliana
transcript AT5G57625.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439734|gb|EG482326.1|EG482326
EST:     AATCGCTAGACTATTCCTTGATCCACATAACGCTCTTCGGTCCGGACTAG                         GTTTGCCTCCATTGATTTGGGACGGTAAACTAGCGAGCTACGCAACATGGT
genomic: AATCGCTAGACTATTCCTTGATCCACATAACGCTCTTCGGTCCGGACTAGgtatttattt ... ttcctattagGTTTGCCTCCATTGATTTGGGACGGTAAACTAGCGAGCTACGCAACATGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtataatgttattgttattggttttgatgaaatgaatttcatttcctattagGTTTGCCTCCATTGATTTGGGACGGTAAACTAGCGAGCTACGCAACATGGTGGGCTAACCAGAGGCGTTACGACTGCTCCTTAACCCATTCCACCGGCCC
                        ttttgat  putative branch site (score: 4)
                                       tttcatttcctatt  putative PPT
     ataatgttattgttat  TA-rich tract