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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttgctttcttcttagttcttcttctgaaatgtgattttaagacttaaacaaaatctctctgtgtctttgaaaaaacagACTGCGTTTACCACTAAGCAAAACTATGGAATAGAGGAGAGGGAAGCACAATGGGCTCATGCACAAAGGACTTTACACGGTCTTCAGAACACTGAAACAG

Basic information

species Arabidopsis thaliana
transcript AT5G57350.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116469139|gb|EG511731.1|EG511731
EST:     GGAACAGCCTGGAAGAATATCATTGACACCAGG                         ACTGCGTTTACCACTAAGCAAAACTATGGAATAGAGGAGAGGGAAGCACAA
genomic: GGAACAGCCTGGAAGAATATCATTGACAACAGGgtacgttttg ... gaaaaaacagACTGCGTTTACCACTAAGCAAAACTATGGAATAGAGGAGAGGGAAGCACAA
EST: gi|125318727|gb|EL332812.1|EL332812
EST:     GCCGGAACAGCCTGGAAGAATATCATTGACAACAGG                         ACTGCGTTTACCACTAAGCAAAACTATGGAATAGAGGAGAGGGAAGCACAA
genomic: GCCGGAACAGCCTGGAAGAATATCATTGACAACAGGgtacgttttg ... gaaaaaacagACTGCGTTTACCACTAAGCAAAACTATGGAATAGAGGAGAGGGAAGCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaatgtgattttaagacttaaacaaaatctctctgtgtctttgaaaaaacagACTGCGTTTACCACTAAGCAAAACTATGGAATAGAGGAGAGGGAAGCACAATGGGCTCATGCACAAAGGACTTTACACGGTCTTCAGAACACTGAAACAG
          attttaagacttaaac  TA-rich tract