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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTGTAATCCTCCTCAACACCACTTCGATTTAGCTCAGCCCATCTTCCTCCGTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTCCAATACCGGAGgtacgtttcccgatctcggtttagctcggtttggtaattggtacgtgtggtttgatttatgctctgttttttaaatcag

Basic information

species Arabidopsis thaliana
transcript AT5G56320.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474294|gb|EG516886.1|EG516886
EST:     CTCCGTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTCCAATACCGGAG                         AGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCAACGGTCATTC
genomic: CTCCGTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTCCAATACCGGAGgtacgtttcc ... tttaaatcagAGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCAACGGTCATTC
EST: gi|116474292|gb|EG516884.1|EG516884
EST:     CTCCGTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTCCAATACCGGAG                         AGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCAACGGTCATTC
genomic: CTCCGTATTGCTCAATACAAAGCCGGCGTCGTCCCTGTCCAATACCGGAGgtacgtttcc ... tttaaatcagAGTGGCTTGCCGGAGAAAAGGAGGAATAAGATTCACGATCAACGGTCATTC